Auckland Bioengineering Institute

Refereed journal articles - 2011

A list of refereed journal articles authored or co-authored by staff and students at the Auckland Bioengineering Institute and published in 2011.

A comparison of gold versus silver electrode contacts for high-resolution gastric electrical mapping using flexible printed circuit board arrays. O'Grady, G., Paskaranandavadivel, N., Angeli, T. R., Du, P., Windsor, J. A., Cheng, L. K., and Pullan, A. J. 2011. Physiological Measurement, 32(3): N13--N22.
A numerical approach to patient-specific cerebral vasospasm research. Ho, H., Zhang, C., Xie, X., and Hunter, P. 2011. Acta Neurochirurgica Supplement, 110(Pt 2): 157-60.
A tool for multi-scale modelling of the renal nephron. Nickerson, D. P., Terkildsen, J. R., Hamilton, K. L., and Hunter, P. J. 2011. Interface Focus, 1(3): 417-425.
A two-compartment mechanochemical model of the roles of transforming growth factor beta and tissue tension in dermal wound healing. Murphy, K. E., Hall, C. L., McCue, S. W., and McElwain, D. L. S. 2011. Journal of Theoretical Biology, 272(1): 145--159.
Adaptations for economical bipedal running: the effect of limb structure on three-dimensional joint mechanics. Rubenson, J., Lloyd, D. G., Heliams, D. B., Besier, T. F., and Fournier, P. A. 2011. Journal of the Royal Society Interface, 8(58): 740--755.
Anatomical registration and three-dimensional visualization of low and high-resolution pan-colonic manometry recordings. Davidson, J. B., O'Grady, G., Arkwright, J. W., Zarate, N., Scott, S. M., Pullan, A. J., and Dinning, P. G. 2011. Neurogastroenterology and Motility, 23(4): .
Automated gastric slow wave cycle partitioning and visualization for high-resolution activation time maps. Erickson, J. C., O'Grady, G., Du, P., Egbuji, J. U., Pullan, A. J., and Cheng, L. K. 2011. Annals of Biomedical Engineering, 39(1): 469--483.
Baroreflex control of renal sympathetic nerve activity and heart rate in near-term fetal sheep. Booth, L. C., Gunn, A. J., Malpas, S. C., Barrett, C. J., Davidson, J. O., Guild, S.-J., and Bennet, L. 2011. Experimental Physiology, 96(8): 736-44.
Biophysical characterization of ovine forestomach extracellular matrix biomaterials. Floden, E. W., Malak, S. F. F., Basil-Jones, M. M., Negron, L., Fisher, J. N., Lun, S., Dempsey, S. G., Haverkamp, R. G., Ward, B. R., and May, B. C. H. 2011. Journal of Biomedical Materials Research Part B-Applied Biomaterials, 96B(1): 67--75.
Cardiac cell modelling: Observations from the heart of the cardiac physiome project. Fink, M., Niederer, S. A., Cherry, E. M., Fenton, F. H., Koivumaki, J. T., Seemann, G., Thul, R., Zhang, H., Sachse, F. B., Beard, D., Crampin, E. J., and Smith, N. P. 2011. Progress In Biophysics and Molecular Biology, 104(1-3): 2--21.
Comments on Point:Counterpoint: Muscle lactate and H⁺ production do/do not have a 1:1 association in skeletal muscle. Lactate and acidosis yet again?. Crampin, E. J. 2011. Journal of Applied Physiology, 110(5): 1495.
Coupling multi-physics models to cardiac mechanics. Nordsetten, D. A., Niederer, S. A., Nash, M. P., Hunter, P. J., and Smith, N. P. 2011. Progress In Biophysics and Molecular Biology, 104(1-3): 77-88.
Development and performance of a controllable autoloading needle-free jet injector. Hemond, B. D., Taberner, A., Hogan, C., Crane, B., and Hunter, I. W. 2011. Journal of Medical Devices, 5(1): 015001.
Differences in patellofemoral kinematics between weight-bearing and non-weight-bearing conditions in patients with patellofemoral pain. Draper, C. E., Besier, T. F., Fredericson, M., Santos, J. M., Beaupre, G. S., Delp, S. L., and Gold, G. E. 2011. Journal of Orthopaedic Research, 29(3): 312--317.
Effect of shoulder taping on maximum shoulder external and internal rotation range in uninjured and previously injured overhead athletes during a seated throw. McConnell, J., Donnelly, C., Hamner, S., Dunne, J., and Besier, T. 2011. Journal of Orthopaedic Research, 29(9): 1406-11.
Estimation of glucose uptake by ovarian follicular cells. Clark, A., Stokes, Y., and Thompson, J. 2011. Annals of Biomedical Engineering, : 1-14.
Evidence for minimal oxygen heterogeneity in the healthy human pulmonary acinus. Swan, A. J. and Tawhai, M. H. 2011. Journal of Applied Physiology, 110(2): 528--537.
Exacerbated potassium-induced paralysis of mouse soleus muscle at 37 degrees C vis-a-vis 25 degrees C: implications for fatigue. Cairns, S. P., Leader, J. P., and Loiselle, D. S. 2011. Pflugers Archiv-European Journal of Physiology, 461(4): 469--479.
Functional movement screen: inter-rater and subject reliability. Shultz, R., Mooney, K., Anderson, S., Marcello, B., Garza, D., Matheson, G. O., and Besier, T. 2011. British Journal of Sports Medicine, 45(4): 374.
Influence of stretching and warm-up on Achilles tendon material properties. Park, D. Y., Rubenson, J., Carr, A., Mattson, J., Besier, T., and Chou, L. B. 2011. Foot and Ankle International, 32(4): 407-13.
Lymphatic drainage and tumour prevalence in the breast: a statistical analysis of symmetry, gender and node field independence. Blumgart, E. I., Uren, R. F., Nielsen, P. M. F., Nash, M. P., and Reynolds, H. M. 2011. Journal of Anatomy, 218(6): 652-9.
Maturation-related changes in the pattern of renal sympathetic nerve activity from fetal life to adulthood. Booth, L. C., Bennet, L., Guild, S.-J., Barrett, C. J., May, C. N., Gunn, A. J., and Malpas, S. C. 2011. Experimental Physiology, 96(2): 85--93.
MCMC estimation of Markov Models for ion channels. Siekmann, I., Wagner, Larry E., I., Yule, D., Fox, C., Bryant, D., Crampin, E. J., and Sneyd, J. 2011. Biophysical Journal, 100(8): 1919--1929.
Measurement of the force-displacement response of in vivo human skin under a rich set of deformations. Flynn, C., Taberner, A., and Nielsen, P. 2011. Medical Engineering and Physics, 33(5): 610--619.
Mechanical characterisation of in vivo human skin using a 3D force-sensitive micro-robot and finite element analysis. Flynn, C., Taberner, A., and Nielsen, P. 2011. Biomechanics and Modeling In Mechanobiology, 10(1): 27--38.
Minimum Information About a Simulation Experiment (MIASE). Waltemath, D., Adams, R., Beard, D. A., Bergmann, F. T., Bhalla, U. S., Britten, R., Chelliah, V., Cooling, M. T., Cooper, J., Crampin, E. J., Garny, A., Hoops, S., Hucka, M., Hunter, P., Klipp, E., Laibe, C., Miller, A. K., Moraru, I., Nickerson, D., Nielsen, P., Nikolski, M., Sahle, S., Sauro, H. M., Schmidt, H., Snoep, J. L., Tolle, D., Wolkenhauer, O., and Le Novere, N. 2011. PloS Computational Biology, 7(4): e1001122.
Model annotation for synthetic biology: automating model to nucleotide sequence conversion. Misirli, G., Hallinan, J. S., Yu, T., Lawson, J. R., Wimalaratne, S. M., Cooling, M. T., and Wipat, A. 2011. Bioinformatics, 27(7): 973--979.
Modelling collagen fibre orientation in porcine skin based upon confocal laser scanning microscopy. Jor, J. W. Y., Nielsen, P. M. F., Nash, M. P., and Hunter, P. J. 2011. Skin Research and Technology, 17(2): 149--159.
Modelling the mechanical response of in vivo human skin under a rich set of deformations. Flynn, C., Taberner, A., and Nielsen, P. 2011. Annals of Biomedical Engineering, 39(7): 1935--1946.
Multi-scale lung modelling. Tawhai, M. H. and Bates, J. H. T. 2011. Journal of Applied Physiology, 110(5): 1466-1472.
Muscle activations to stabilize the knee following arthroscopic partial meniscectomy. Sturnieks, D. L., Besier, T. F., and Lloyd, D. G. 2011. Clinical Biomechanics, 26(3): 292--297.
OpenCMISS: A multi-physics and multi-scale computational infrastructure for the VPH/Physiome project. Bradley, C., Bowery, A., Britten, R., Budelmann, V., Camara, O., Christie, R., Cookson, A., Frangi, A. F., Gamage, T. B., Heidlauf, T., Krittian, S., Ladd, D., Little, C., Mithraratne, K., Nash, M., Nickerson, D., Nielsen, P., Nordbø, O., Omholt, S., Pashaei, A., Paterson, D., Rajagopal, V., Reeve, A., Röhrle, O., Safaei, S., Sebastián, R., Steghöfer, M., Wu, T., Yu, T., Zhang, H., and Hunter, P. 2011. Progress in Biophysics and Molecular Biology, : .
Patellar maltracking correlates with vastus medialis activation delay in patellofemoral pain patients. Pal, S., Draper, C. E., Fredericson, M., Gold, G. E., Delp, S. L., Beaupre, G. S., and Besier, T. F. 2011. American Journal of Sports Medicine, 39(3): 590--598.
Power for robotic artificial muscles. Anderson, I. A., Ieropoulos, I. A., McKay, T., O'Brien, B., and Melhuish, C. 2011. IEEE/ASME Transactions on Mechatronics, 16(1): 107--111.
Prediction of glycosaminoglycan content in human cartilage by age, T1 rho and T2 MRI. Keenan, K. E., Besier, T. F., Pauly, J. M., Han, E., Rosenberg, J., Smith, R. L., Delp, S. L., Beaupre, G. S., and Gold, G. E. 2011. Osteoarthritis and Cartilage, 19(2): 171--179.
Radius-dependent decline of performance in isolated cardiac muscle does not reflect inadequacy of diffusive oxygen supply. Han, J.-C., Taberner, A. J., Kirton, R. S., Nielsen, P. M. F., Archer, R., Kim, N., and Loiselle, D. S. 2011. American Journal of Physiology-Heart and Circulatory Physiology, 300(4): H1222--H1236.
Real-time knee adduction moment feedback for gait retraining through visual and tactile displays. Wheeler, J. W., Shull, P. B., and Besier, T. F. 2011. Journal of Biomechanical Engineering, 133(4): 041007.
Regional deposition of particles in an image-based airway model: large-eddy simulation and left-right lung ventilation asymmetry. Lambert, A. R., O'Shaughnessy, P. T., Tawhai, M. H., Hoffman, E. A., and Lin, C.-L. 2011. Aerosol Science and Technology, 45(1): 11--25.
Reliability and accuracy of a video analysis protocol to assess core ability. McDonald, D. A., Delgadillo, J. Q., Fredericson, M., McConnell, J., Hodgins, M., and Besier, T. F. 2011. PM R, 3(3): 204-11.
Revision history aware repositories of computational models of biological systems. Miller, A. K., Yu, T., Britten, R., Cooling, M. T., Lawson, J., Cowan, D., Garny, A., Halstead, M. D. B., Hunter, P. J., Nickerson, D. P., Nunns, G., Wimalaratne, S. M., and Nielsen, P. M. F. 2011. BMC Bioinformatics, 12: 22.
Soft generators using dielectric elastomers. McKay, T. G., O'Brien, B. M., Calius, E. P., and Anderson, I. A. 2011. Applied Physics Letters, 98(14): 142903.
Steady streaming: A key mixing mechanism in low-Reynolds-number acinar flows. Kumar, H., Tawhai, M. H., Hoffman, E. A., and Lin, C.-L. 2011. Physics of Fluids, 23(4): 041902.
The collagenous microstructure of cardiac ventricular trabeculae carneae. Sands, G., Goo, S., Gerneke, D., LeGrice, I., and Loiselle, D. 2011. Journal of Structural Biology, 173(1): 110--116.
The effect of hoof angle variations on dorsal lamellar load in the equine hoof. Ramsey, G. D., Hunter, P. J., and Nash, M. P. 2011. Equine Veterinary Journal, : .
The impact of micro-embolism size on haemodynamic changes in the pulmonary micro-circulation. Clark, A. R., Burrowes, K. S., and Tawhai, M. N. 2011. Respiratory Physiology and Neurobiology, 175(3): 365--374.
The Physiome Model Repository 2. Yu, T., Lloyd, C. M., Nickerson, D. P., Cooling, M. T., Miller, A. K., Garny, A., Terkildsen, J. R., Lawson, J., Britten, R. D., Hunter, P. J., and Nielsen, P. M. F. 2011. Bioinformatics, 27(5): 743--744.
Theoretical investigations on the formation of nitrobenzanthrone-DNA adducts. Arlt, V. M., Phillips, D. H., and Reynisson, J. 2011. Organic and Biomolecular Chemistry, : .
Three-dimensional cardiac tissue image registration for analysis of in vivo electrical mapping. Trew, M. L., Caldwell, B. J., Sands, G. B., LeGrice, I. J., and Smaill, B. H. 2011. Annals of Biomedical Engineering, 39(1): 235--248.
Training multi-parameter gaits to reduce the knee adduction moment with data-driven models and haptic feedback. Shull, P. B., Lurie, K. L., Cutkosky, M. R., and Besier, T. F. 2011. Journal of Biomechanics, 44(8): 1605--1609.
Using SPH one-way coupled to DEM to model wet industrial banana screens. Fernandez, J. W., Cleary, P. W., Sinnott, M. D., and Morrison, R. D. 2011. Minerals Engineering, 24(8): 741 - 753.

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