Auckland Bioengineering Institute


Refereed journal articles - 2012

A list of refereed journal articles authored or co-authored by staff and students at the Auckland Bioengineering Institute and published in 2012.

  • Anderson, I. A., Gisby, T. A., McKay, T. G., O’Brien, B. M., and Calius, E. P. (2012). Multi-functional dielectric elastomer artificial muscles for soft and smart machines. Journal of Applied Physics, 112(4), 041101. doi:10.1063/1.4740023
  • Barrett, M. J. P., Tawhai, M. H., and Suresh, V. (2012). Arteries dominate volume changes during brief functional hyperemia: evidence from mathematical modelling. NeuroImage, 62(1), 482–492. doi:10.1016/j.neuroimage.2012.05.005
  • Booth, L. C., Malpas, S. C., Barrett, C. J., Guild, S.-J., Gunn, A. J., and Bennet, L. (2012). Renal sympathetic nerve activity during asphyxia in fetal sheep. American journal of physiology. Regulatory, integrative and comparative physiology, 303(1), R30–38. doi:10.1152/ajpregu.00063.2012
  • Breen, B. J., Donovan, G. M., Sneyd, J., and Tawhai, M. H. (2012). Quantifying parenchymal tethering in a finite element simulation of a human lung slice under bronchoconstriction. Respiratory physiology & neurobiology, 183(2), 85–90. doi:10.1016/j.resp.2012.06.014
  • De Bono, B., and Hunter, P. (2012). Integrating knowledge representation and quantitative modelling in physiology. Biotechnology journal, 7(8), 958–972. doi:10.1002/biot.201100304
  • Draper, C. E., Quon, A., Fredericson, M., Besier, T. F., Delp, S. L., Beaupre, G. S., and Gold, G. E. (2012). Comparison of MRI and 18F-NaF PET/CT in patients with patellofemoral pain. Journal of magnetic resonance imaging: JMRI, 36(4), 928–932. doi:10.1002/jmri.23682
  • Farajidavar, A., O’Grady, G., Rao, S. M. N., Cheng, L. K., Abell, T., and Chiao, J.-C. (2012). A miniature bidirectional telemetry system for in vivo gastric slow wave recordings. Physiological measurement, 33(6), N29–37. doi:10.1088/0967-3334/33/6/N29
  • Fernandez, J. W., Das, R., Cleary, P. W., Hunter, P. J., Thomas, C. D. . L., and Clement, J. G. (2013). Using smooth particle hydrodynamics to investigate femoral cortical bone remodelling at the Haversian level. International Journal for Numerical Methods in Biomedical Engineering, 29(1), 129–143. doi:10.1002/cnm.2503
  • Fernandez, J. W., Ul Haque, M. Z., Hunter, P. J., and Mithraratne, K. (2012). Mechanics of the foot Part 1: A continuum framework for evaluating soft tissue stiffening in the pathologic foot. International journal for numerical methods in biomedical engineering, 28(10), 1056–1070. doi:10.1002/cnm.2494
  • Grace, P. M., Hurley, D., Barratt, D. T., Tsykin, A., Watkins, L. R., Rolan, P. E., and Hutchinson, M. R. (2012). Harnessing pain heterogeneity and RNA transcriptome to identify blood-based pain biomarkers: a novel correlational study design and bioinformatics approach in a graded chronic constriction injury model. Journal of neurochemistry, 122(5), 976–994. doi:10.1111/j.1471-4159.2012.07833.x
  • Guild, S.-J., McBryde, F. D., Malpas, S. C., and Barrett, C. J. (2012). High dietary salt and angiotensin II chronically increase renal sympathetic nerve activity: a direct telemetric study. Hypertension, 59(3), 614–620. doi:10.1161/HYPERTENSIONAHA.111.180885
  • Gusso, S., Salvador, C., Hofman, P., Cutfield, W., Baldi, J. C., Taberner, A., and Nielsen, P. (2012). Design and testing of an MRI-compatible cycle ergometer for non-invasive cardiac assessments during exercise. BioMedical Engineering OnLine, 11(1), 13. doi:10.1186/1475-925X-11-13
  • Han, J.-C., Taberner, A. J., Tran, K., Goo, S., Nickerson, D. P., Nash, M. P., and Loiselle, D. S. (2012). Comparison of the Gibbs and Suga formulations of cardiac energetics: the demise of “isoefficiency.” Journal of applied physiology (Bethesda, Md.: 1985), 113(7), 996–1003. doi:10.1152/japplphysiol.00693.2011
  • Han, J.-C., Taberner, A. J., Tran, K., Nickerson, D. P., Nash, M. P., Nielsen, P. M. F., and Loiselle, D. S. (2012). Relating components of pressure-volume area in Suga’s formulation of cardiac energetics to components of the stress-time integral. Journal of applied physiology (Bethesda, Md.: 1985), 113(7), 988–995. doi:10.1152/japplphysiol.00438.2012
  • Han, J.-C., Tran, K., Taberner, A. J., Nickerson, D. P., Kirton, R. S., Nielsen, P. M. F., and Loiselle, D. S. (2012). Myocardial twitch duration and the dependence of oxygen consumption on pressure-volume area: experiments and modelling. The Journal of physiology, 590(Pt 18), 4603–4622. doi:10.1113/jphysiol.2012.228965
  • Ho, H., McGhee, C., and Hunter, P. (2012). Numerical analysis for the blood flow in a patient-specific ophthalmic artery. Medical engineering & physics, 34(1), 123–127. doi:10.1016/j.medengphy.2011.06.015
  • Hsia, C. C. W., and Tawhai, M. H. (2012). What can imaging tell us about physiology? Lung growth and regional mechanical strain. Journal of applied physiology (Bethesda, Md.: 1985), 113(6), 937–946. doi:10.1152/japplphysiol.00289.2012
  • Hussan, J. R., Trew, M. L., and Hunter, P. J. (2012). A Mean-Field Model of Ventricular Muscle Tissue – Role of the Extracellular Matrix. Heart, Lung and Circulation, 21(12), 858. doi:10.1016/j.hlc.2012.08.017
  • Keenan, K. E., Pal, S., Lindsey, D. P., Besier, T. F., and Beaupre, G. S. (2012). A Viscoelastic Constitutive Model Can Accurately Represent Entire Creep Indentation Tests of Human Patella Cartilage. Journal of applied biomechanics.
  • Kim, J H K, Pullan, A. J., Bradshaw, L. A., and Cheng, L. K. (2012). Influence of body parameters on gastric bioelectric and biomagnetic fields in a realistic volume conductor. Physiological measurement, 33(4), 545–556. doi:10.1088/0967-3334/33/4/545
  • Kim, Juliana H K, Trew, M. L., Pullan, A. J., and Röhrle, O. (2012). Simulating a dual-array electrode configuration to investigate the influence of skeletal muscle fatigue following functional electrical stimulation. Computers in biology and medicine, 42(9), 915–924. doi:10.1016/j.compbiomed.2012.07.004
  • Kinney, A. L., Besier, T. F., Silder, A., Delp, S. L., D’Lima, D. D., and Fregly, B. J. (2012). Changes in in vivo knee contact forces through gait modification. Journal of orthopaedic research: official publication of the Orthopaedic Research Society. doi:10.1002/jor.22240
  • Krittian, S. B. S., Lamata, P., Michler, C., Nordsletten, D. A., Bock, J., Bradley, C. P., and Smith, N. P. (2012). A finite-element approach to the direct computation of relative cardiovascular pressure from time-resolved MR velocity data. Medical image analysis, 16(5), 1029–1037. doi:10.1016/j.media.2012.04.003
  • Lauzon, A.-M., Bates, J. H. T., Donovan, G., Tawhai, M., Sneyd, J., and Sanderson, M. J. (2012). A multi-scale approach to airway hyperresponsiveness: from molecule to organ. Frontiers in physiology, 3, 191. doi:10.3389/fphys.2012.00191
  • LeGrice, I. J., Pope, A. J., Sands, G. B., Whalley, G., Doughty, R. N., and Smaill, B. H. (2012). Progression of myocardial remodeling and mechanical dysfunction in the spontaneously hypertensive rat. American journal of physiology. Heart and circulatory physiology, 303(11), H1353–1365. doi:10.1152/ajpheart.00748.2011
  • Leonard, B. L., Smaill, B. H., and LeGrice, I. J. (2012). Structural remodeling and mechanical function in heart failure. Microscopy and microanalysis: the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada, 18(1), 50–67. doi:10.1017/S1431927611012438
  • Leung, M., Kang, S. S. O., Turuwhenua, J., and Jacobs, R. (2012). Effects of illumination and observation angle on the van Herick procedure. Clinical & experimental optometry: journal of the Australian Optometrical Association, 95(1), 72–77. doi:10.1111/j.1444-0938.2011.00646.x
  • Lippok, N., Coen, S., Leonhardt, R., Nielsen, P., and Vanholsbeeck, F. (2012). Instantaneous quadrature components or Jones vector retrieval using the Pancharatnam-Berry phase in frequency domain low-coherence interferometry. Optics letters, 37(15), 3102–3104.
  • Lippok, N., Coen, S., Nielsen, P., and Vanholsbeeck, F. (2012). Dispersion compensation in Fourier domain optical coherence tomography using the fractional Fourier transform. Optics express, 20(21), 23398–23413.
  • López-Muedano, C., Kirton, R. S., Kumble, K. D., and Taberner, A. J. (2012). Inexpensive optical system for microarray ELISA. Talanta, 100, 405–409. doi:10.1016/j.talanta.2012.07.098
  • Maclaren, O. J., Sneyd, J., and Crampin, E. J. (2012). Efficiency of Primary Saliva Secretion: An Analysis of Parameter Dependence in Dynamic Single-Cell and Acinus Models, with Application to Aquaporin Knockout Studies. The Journal of Membrane Biology, 245(1), 29–50. doi:10.1007/s00232-011-9413-3
  • McBryde, F. D., Guild, S.-J., Malpas, S. C., and Barrett, C. J. (2012). Cardiovascular and autonomic responses to sexual activity in the rabbit. Clinical and experimental pharmacology & physiology, 39(6), 560–563. doi:10.1111/j.1440-1681.2012.05696.x
  • McConnell, J., Donnelly, C., Hamner, S., Dunne, J., and Besier, T. (2012). Passive and dynamic shoulder rotation range in uninjured and previously injured overhead throwing athletes and the effect of shoulder taping. PM & R: the journal of injury, function, and rehabilitation, 4(2), 111–116. doi:10.1016/j.pmrj.2011.11.010
  • Medrano-Gracia, P., Bluemke, D. A., Cowan, B. R., Finn, J., Lee, D. C., Lima, J. A., and Young, A. A. (2012). Detection and correction of regional shape bias arising from imaging protocol: differences between GRE and SSFP. Journal of Cardiovascular Magnetic Resonance, 14(Suppl 1), P270. doi:10.1186/1532-429X-14-S1-P270
  • Miller, A. K., Britten, R. D., and Nielsen, P. M. F. (2012). Declarative Representation of Uncertainty in Mathematical Models. (F. Castiglione, Ed.)PLoS ONE, 7(7), e39721. doi:10.1371/journal.pone.0039721
  • Mitchell, J. H., Hoffman, E. A., and Tawhai, M. H. (2012). Relating indices of inert gas washout to localised bronchoconstriction. Respiratory physiology & neurobiology, 183(3), 224–233. doi:10.1016/j.resp.2012.06.031
  • Mithraratne, K., Ho, H., Hunter, P. J., and Fernandez, J. W. (2012). Mechanics of the foot Part 2: A coupled solid-fluid model to investigate blood transport in the pathologic foot. International journal for numerical methods in biomedical engineering, 28(10), 1071–1081. doi:10.1002/cnm.2493
  • Miyawaki, S., Tawhai, M. H., Hoffman, E. A., and Lin, C.-L. (2012). Effect of carrier gas properties on aerosol distribution in a CT-based human airway numerical model. Annals of biomedical engineering, 40(7), 1495–1507. doi:10.1007/s10439-011-0503-2
  • Murphy, K. E., Hall, C. L., Maini, P. K., McCue, S. W., and McElwain, D. L. S. (2012). A fibrocontractive mechanochemical model of dermal wound closure incorporating realistic growth factor kinetics. Bulletin of mathematical biology, 74(5), 1143–1170. doi:10.1007/s11538-011-9712-y
  • Murphy, K. E., McCue, S. W., and McElwain, D. L. S. (2012). Clinical strategies for the alleviation of contractures from a predictive mathematical model of dermal repair. Wound repair and regeneration: official publication of the Wound Healing Society [and] the European Tissue Repair Society, 20(2), 194–202. doi:10.1111/j.1524-475X.2012.00775.x
  • O’Brien, B. M., and Anderson, I. A. (2012). An Artificial Muscle Ring Oscillator. IEEE/ASME Transactions on Mechatronics, 17(1), 197–200. doi:10.1109/TMECH.2011.2165553
  • O’Brien, B. M., McKay, T. G., Gisby, T. A., and Anderson, I. A. (2012). Rotating turkeys and self-commutating artificial muscle motors. Applied Physics Letters, 100(7), 074108. doi:10.1063/1.3685708
  • O’Grady, G. (2012). Gastrointestinal extracellular electrical recordings: fact or artifact? Neurogastroenterology and motility: the official journal of the European Gastrointestinal Motility Society, 24(1), 1–6. doi:10.1111/j.1365-2982.2011.01815.x
  • O’Grady, G, Du, P., Paskaranandavadivel, N., Angeli, T. R., Lammers, W. J. E. P., Asirvatham, S. J., and Cheng, L. K. (2012). Rapid high-amplitude circumferential slow wave propagation during normal gastric pacemaking and dysrhythmias. Neurogastroenterology and motility: the official journal of the European Gastrointestinal Motility Society, 24(7), e299–312. doi:10.1111/j.1365-2982.2012.01932.x
  • O’Grady, Gregory, Angeli, T. R., Du, P., Lahr, C., Lammers, W. J. E. P., Windsor, J. A., and Cheng, L. K. (2012a). Abnormal initiation and conduction of slow-wave activity in gastroparesis, defined by high-resolution electrical mapping. Gastroenterology, 143(3), 589–598.e1–3. doi:10.1053/j.gastro.2012.05.036
  • O’Grady, Gregory, Angeli, T. R., Du, P., Lahr, C., Lammers, W. J. E. P., Windsor, J. A., and Cheng, L. K. (2012b). Abnormal initiation and conduction of slow-wave activity in gastroparesis, defined by high-resolution electrical mapping. Gastroenterology, 143(3), 589–598.e1–3. doi:10.1053/j.gastro.2012.05.036
  • O’Grady, Gregory, Harper, S., Loveday, B., Adams, B., Civil, I. D., and Peters, M. (2012). Appropriate working hours for surgical training according to Australasian trainees. ANZ Journal of Surgery, 82(4), 225–229. doi:10.1111/j.1445-2197.2011.05992.x
  • O’Grady, Gregory, Pullan, A. J., and Cheng, L. K. (2012). The analysis of human gastric pacemaker activity. The Journal of Physiology, 590(5), 1299–1300. doi:10.1113/jphysiol.2011.224014
  • Pal, S., Besier, T. F., Draper, C. E., Fredericson, M., Gold, G. E., Beaupre, G. S., and Delp, S. L. (2012). Patellar tilt correlates with vastus lateralis: vastus medialis activation ratio in maltracking patellofemoral pain patients. Journal of orthopaedic research: official publication of the Orthopaedic Research Society, 30(6), 927–933. doi:10.1002/jor.22008
  • Palk, L., Sneyd, J., Patterson, K., Shuttleworth, T. J., Yule, D. I., Maclaren, O., and Crampin, E. J. (2012). Modelling the effects of calcium waves and oscillations on saliva secretion. Journal of theoretical biology, 305, 45–53. doi:10.1016/j.jtbi.2012.04.009
  • Paskaranandavadivel, N, O’Grady, G., Du, P., and K Cheng, L. (2013). Comparison of filtering methods for extracellular gastric slow wave recordings. Neurogastroenterology and motility: the official journal of the European Gastrointestinal Motility Society, 25(1), 79–83. doi:10.1111/nmo.12012
  • Paskaranandavadivel, Niranchan, O’Grady, G., Du, P., Pullan, A. J., and Cheng, L. K. (2012). An improved method for the estimation and visualization of velocity fields from gastric high-resolution electrical mapping. IEEE transactions on bio-medical engineering, 59(3), 882–889. doi:10.1109/TBME.2011.2181845
  • Pinkham, M. I., Guild, S.-J., Malpas, S. C., and Barrett, C. J. (2012). Effects of sex and ovarian hormones on the initial renal sympathetic nerve activity response to myocardial infarction. Experimental physiology, 97(9), 1040–1053. doi:10.1113/expphysiol.2012.065615
  • Ramsey, G.D., Hunter, P. J., and Nash, M. P. (2012a). Detailed hoof morphometry is sparsely documented. Equine Veterinary Journal, 44(4), 500–500. doi:10.1111/j.2042-3306.2012.00587.x
  • Ramsey, G.D., Hunter, P. J., and Nash, M. P. (2012b). Insight from modelling can address controversial observations. Equine Veterinary Journal, 44(4), 499–500. doi:10.1111/j.2042-3306.2012.00585.x
  • Ramsey, Glenn D., Hunter, P. J., and Nash, M. P. (2012). The influence of tissue hydration on equine hoof capsule deformation and energy storage assessed using finite element methods. Biosystems Engineering, 111(2), 175–185. doi:10.1016/j.biosystemseng.2011.11.010
  • Roberts, P., Cowan, B. R., and Young, A. A. (2012). Real time MRI pulse wave velocity for exercise stress testing. Journal of Cardiovascular Magnetic Resonance, 14(Suppl 1), P228. doi:10.1186/1532-429X-14-S1-P228
  • Rutherford, S. L., Trew, M. L., Sands, G. B., LeGrice, I. J., and Smaill, B. H. (2012). High-resolution 3-dimensional reconstruction of the infarct border zone: impact of structural remodeling on electrical activation. Circulation research, 111(3), 301–311. doi:10.1161/CIRCRESAHA.111.260943
  • Shim, V. B., Pitto, R. P., and Anderson, I. A. (2012). Quantitative CT with finite element analysis: towards a predictive tool for bone remodelling around an uncemented tapered stem. International orthopaedics, 36(7), 1363–1369. doi:10.1007/s00264-012-1513-x
  • Silder, A., Besier, T., and Delp, S. L. (2012). Predicting the metabolic cost of incline walking from muscle activity and walking mechanics. Journal of biomechanics, 45(10), 1842–1849. doi:10.1016/j.jbiomech.2012.03.032
  • Stehlin, E., Malpas, S., Heppner, P., Hu, P., Lim, M., and Budgett, D. (2012). Implantable ICP monitor for improved hydrocephalus management. Acta neurochirurgica. Supplement, 114, 101–104. doi:10.1007/978-3-7091-0956-4_18
  • Steinke, H., Lingslebe, U., Böhme, J., Slowik, V., Shim, V., Hädrich, C., and Hammer, N. (2012). Deformation behavior of the iliotibial tract under different states of fixation. Medical engineering & physics, 34(9), 1221–1227. doi:10.1016/j.medengphy.2011.12.009
  • Swan, A. J., Clark, A. R., and Tawhai, M. H. (2012). A computational model of the topographic distribution of ventilation in healthy human lungs. Journal of Theoretical Biology, 300, 222–231. doi:10.1016/j.jtbi.2012.01.042
  • Taberner, A., Hogan, N. C., and Hunter, I. W. (2012). Needle-free jet injection using real-time controlled linear Lorentz-force actuators. Medical engineering & physics, 34(9), 1228–1235. doi:10.1016/j.medengphy.2011.12.010
  • Turuwhenua, J. T., Patel, D. V., and McGhee, C. N. J. (2012). Fully automated montaging of laser scanning in vivo confocal microscopy images of the human corneal subbasal nerve plexus. Investigative ophthalmology & visual science, 53(4), 2235–2242. doi:10.1167/iovs.11-8454
  • Vaghefi, E., Malcolm, D. T. K., Jacobs, M. D., and Donaldson, P. J. (2012). Development of a 3D finite element model of lens microcirculation. Biomedical engineering online, 11, 69. doi:10.1186/1475-925X-11-69
  • Vaghefi, E., Walker, K., Pontre, B. P., Jacobs, M. D., and Donaldson, P. J. (2012). Magnetic resonance and confocal imaging of solute penetration into the lens reveals a zone of restricted extracellular space diffusion. American journal of physiology. Regulatory, integrative and comparative physiology, 302(11), R1250–1259. doi:10.1152/ajpregu.00611.2011
  • Wang, B., Hu, A. P., and Budgett, D. (2012). Power Flow Control Based Solely on Slow Feedback Loop for Heart Pump Applications. IEEE Transactions on Biomedical Circuits and Systems, 6(3), 279–286. doi:10.1109/TBCAS.2011.2171689
  • Wang, L., Hurley, D. G., Watkins, W., Araki, H., Tamada, Y., Muthukaruppan, A., and Print, C. G. (2012). Cell Cycle Gene Networks Are Associated with Melanoma Prognosis. (Y. Xu, Ed.)PLoS ONE, 7(4), e34247. doi:10.1371/journal.pone.0034247
  • Wang, V. Y., Casta, C., Croisille, P., Clarysse, P., Zhu, Y.-M., Cowan, B. R., and Nash, M. P. (2012). Estimation of In Vivo Human Myocardial Fibre Strain by Integrating Diffusion Tensor and Tagged MRI Using FE Modelling. Heart, Lung and Circulation, 21(12), 864. doi:10.1016/j.hlc.2012.08.034
  • Wang, Y., Gjuvsland, A. B., Vik, J. O., Smith, N. P., Hunter, P. J., and Omholt, S. W. (2012). Parameters in Dynamic Models of Complex Traits are Containers of Missing Heritability. (F. P. Roth, Ed.)PLoS Computational Biology, 8(4), e1002459. doi:10.1371/journal.pcbi.1002459
  • Wang, Y. K., Nash, M. P., Pullan, A. J., Kieser, J. A., and Röhrle, O. (2013). Model-based identification of motion sensor placement for tracking retraction and elongation of the tongue. Biomechanics and modeling in mechanobiology, 12(2), 383–399. doi:10.1007/s10237-012-0407-6
  • Yassi, R., O’Grady, G., Paskaranandavadivel, N., Du, P., Angeli, T. R., Pullan, A. J., and Erickson, J. C. (2012). The gastrointestinal electrical mapping suite (GEMS): software for analyzing and visualizing high-resolution (multi-electrode) recordings in spatiotemporal detail. BMC Gastroenterology, 12(1), 60. doi:10.1186/1471-230X-12-60
  • Young, A. A. (2012). Ventricular torsion: an aid to ejection? JACC. Cardiovascular imaging, 5(3), 282–284. doi:10.1016/j.jcmg.2011.11.016
  • Young, A. A., and Cowan, B. R. (2012). Evaluation of left ventricular torsion by cardiovascular magnetic resonance. Journal of Cardiovascular Magnetic Resonance, 14(1), 49. doi:10.1186/1532-429X-14-49
  • Young, A. A., Li, B., Kirton, R. S., and Cowan, B. R. (2012). Generalized spatiotemporal myocardial strain analysis for DENSE and SPAMM imaging. Magnetic resonance in medicine: official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine, 67(6), 1590–1599. doi:10.1002/mrm.23142
  • Zhao, J., Butters, T. D., Zhang, H., Pullan, A. J., LeGrice, I. J., Sands, G. B., and Smaill, B. H. (2012). An image-based model of atrial muscular architecture: effects of structural anisotropy on electrical activation. Circulation. Arrhythmia and electrophysiology, 5(2), 361–370. doi:10.1161/CIRCEP.111.967950